STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B2127Putative oxidoreductase. (465 aa)    
Predicted Functional Partners:
Bxe_C0528
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
   
   0.757
Bxe_A0365
Glutamate synthase (NADH) large subunit.
    
 0.707
Bxe_A2428
Putative L-lactate dehydrogenase.
 0.666
Bxe_C0228
(S)-2-hydroxy-acid oxidase.
 0.666
Bxe_A4171
Putative cytochrome c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.627
Bxe_A3368
L-lactate dehydrogenase (cytochrome).
 
 0.621
Bxe_B0107
Putative FMN-dependent dehydrogenase.
 
 0.621
Bxe_B0136
S-mandelate dehydrogenase (MdlB); Mandelate pathway; Citation: Biochemistry 29 (42), 9856-9862 (1990).
 
 0.621
Bxe_A2221
Putative glycolate oxidase iron-sulfur subunit, GlcF.
 
 0.612
Bxe_B0542
Conserved hypothetical protein.
    
   0.597
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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