STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B25134,5-dihydroxyphthalate decarboxylase. (327 aa)    
Predicted Functional Partners:
Bxe_B0221
GAF sensor hybrid histidine kinase.
    
  0.657
Bxe_A2721
Predicted metal-dependent hydrolase.
 
     0.625
Bxe_B2515
Putative tripartite tricarboxylate transporter(TTT) family, TctB (4TM) subunit.
 
     0.591
Bxe_A1113
Putative dioxygenase.
  
     0.559
Bxe_B1216
Multi-sensor hybrid histidine kinase.
    
  0.544
Bxe_A1835
PAS/PAC sensor hybrid histidine kinase.
    
  0.536
Bxe_A2619
PAS/PAC sensor hybrid histidine kinase.
    
  0.536
Bxe_A4534
PAS/PAC sensor hybrid histidine kinase.
    
  0.536
Bxe_C1277
PAS/PAC sensor hybrid histidine kinase.
    
  0.536
Bxe_A4067
Amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC sensor hybrid histidine kinase.
    
 0.530
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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