STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B3003Metal dependent phosphohydrolase. (212 aa)    
Predicted Functional Partners:
Bxe_A0159
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.727
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.624
Bxe_B3004
Transcriptional regulator, AraC family with amidase-like domain.
 
     0.605
Bxe_A0117
Outer membrane porin, OmpA/MotB family.
    
   0.592
Bxe_A0850
Outer membrane protein, OmpA/MotB family.
    
   0.592
Bxe_A2088
Outer membrane protein, OmpA/MotB family.
    
   0.592
Bxe_B0804
Outer membrane protein, OmpA/MotB family.
    
   0.592
Bxe_B2218
Putative flagellar motor protein motB.
    
   0.592
Bxe_C1375
Putative flagellar motor protein (MotB).
    
   0.592
Bxe_C0070
Putative membrane protein.
  
     0.540
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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