STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B3005Putative short-chain dehydrogenase. (252 aa)    
Predicted Functional Partners:
Bxe_A0365
Glutamate synthase (NADH) large subunit.
     
 0.649
Bxe_B2749
Putative flavodoxin oxidoreductase.
  
 0.623
Bxe_A0829
Putative Ferredoxin--NAD(+) oxidoreductase.
  
 0.622
Bxe_A1828
Putative CDP-6-deoxy-delta-3,4- glucoseen reductase.
  
 0.617
Bxe_B1235
Putative exonuclease.
    
 
 0.593
Bxe_A1076
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.584
Bxe_A0941
3-oxoacyl-[acyl-carrier-protein] synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.582
Bxe_A0931
Putative AMP-dependent synthetase and ligase.
  
 0.580
Bxe_A3559
Xylene monooxygenase electron transfer component; P-cymene pathway; Citation: J. Bacteriol. 179 (10), 3171-3180 (1997).Biochem. Biophys. Res. Commun. 233 (2), 502-506 (1997).
   
 0.568
Bxe_A4153
PTS system IIA component, Glc family / Phosphocarrier protein HPr; TC 4.A.1; Belongs to the PEP-utilizing enzyme family.
     
 0.566
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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