STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_C0053Putative poly-beta-hydroxybutyrate polymerase. (598 aa)    
Predicted Functional Partners:
Bxe_C0052
Phosphate butyryltransferase.
 
 0.976
Bxe_B2941
Polyhydroxyalkanoate depolymerase.
 
  
 0.944
Bxe_A3308
Polyhydroxyalkanoate depolymerase.
 
  
 0.924
Bxe_B0357
Phosphate butyryltransferase.
 
 0.899
Bxe_A2341
3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.885
ackA-3
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 0.861
Bxe_A2343
Poly(R)-hydroxyalkanoic acid synthase, class I.
  
  
 
0.833
atpC2
H+-transporting two-sector ATPase, delta/epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.825
Bxe_C0050
Enoyl-[acyl-carrier-protein] reductase (NADH).
 
    0.825
Bxe_C0047
Putative ATP synthesis-related protein.
 
     0.821
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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