STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_C0504Putative carboxymuconolactone decarboxylase. (254 aa)    
Predicted Functional Partners:
Bxe_C0505
Conserved hypothetical protein.
    
 0.797
Bxe_C0506
Hypothetical protein.
    
 0.797
Bxe_C0507
Putative HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.741
Bxe_C0508
Putative dehydrogenase flavoprotein.
       0.741
Bxe_C0509
Hypothetical protein.
       0.741
Bxe_A2370
Putative carboxymuconolactone decarboxylase.
  
     0.696
Bxe_C0510
Conserved hypothetical protein.
    
  0.644
Bxe_C0511
Putative acetyl-CoA acetyltransferase.
    
 0.594
pcaC
4-carboxymuconolactone decarboxylase; Protocatechuate pathway; Citation: Nucleic Acids Res. 32 (19), 5766- 5779(2004).
  
     0.580
icmF
Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly (By similarity). Does not exhibit methylmalonyl- CoA mutase (MCM) activity.
    
  0.516
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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