Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bxe_A0241 | Bxe_A2026 | Signal Transduction Histidine Kinases (STHK). | PAS/PAC sensor hybrid histidine kinase. | 0.997 |
Bxe_A0241 | Bxe_A2742 | Signal Transduction Histidine Kinases (STHK). | Putative enoyl-CoA hydratase/isomerase, CaiD/MenB-like protein. | 0.846 |
Bxe_A0241 | Bxe_A4067 | Signal Transduction Histidine Kinases (STHK). | Amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC sensor hybrid histidine kinase. | 0.999 |
Bxe_A0241 | Bxe_B0006 | Signal Transduction Histidine Kinases (STHK). | Periplasmic sensor hybrid histidine kinase. | 0.912 |
Bxe_A0241 | Bxe_B0221 | Signal Transduction Histidine Kinases (STHK). | GAF sensor hybrid histidine kinase. | 0.999 |
Bxe_A0241 | Bxe_B1089 | Signal Transduction Histidine Kinases (STHK). | enoyl-CoA hydratase/isomerase family. | 0.846 |
Bxe_A0241 | Bxe_B1216 | Signal Transduction Histidine Kinases (STHK). | Multi-sensor hybrid histidine kinase. | 0.999 |
Bxe_A0241 | Bxe_B1330 | Signal Transduction Histidine Kinases (STHK). | Periplasmic sensor hybrid histidine kinase. | 0.915 |
Bxe_A0241 | Bxe_B1887 | Signal Transduction Histidine Kinases (STHK). | Putative enoyl-CoA hydratase/isomerase. | 0.846 |
Bxe_A0241 | Bxe_C0515 | Signal Transduction Histidine Kinases (STHK). | Enoyl-CoA hydratase. | 0.846 |
Bxe_A2026 | Bxe_A0241 | PAS/PAC sensor hybrid histidine kinase. | Signal Transduction Histidine Kinases (STHK). | 0.997 |
Bxe_A2026 | Bxe_A2742 | PAS/PAC sensor hybrid histidine kinase. | Putative enoyl-CoA hydratase/isomerase, CaiD/MenB-like protein. | 0.881 |
Bxe_A2026 | Bxe_A4067 | PAS/PAC sensor hybrid histidine kinase. | Amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC sensor hybrid histidine kinase. | 0.999 |
Bxe_A2026 | Bxe_B0006 | PAS/PAC sensor hybrid histidine kinase. | Periplasmic sensor hybrid histidine kinase. | 0.997 |
Bxe_A2026 | Bxe_B0221 | PAS/PAC sensor hybrid histidine kinase. | GAF sensor hybrid histidine kinase. | 0.999 |
Bxe_A2026 | Bxe_B1089 | PAS/PAC sensor hybrid histidine kinase. | enoyl-CoA hydratase/isomerase family. | 0.881 |
Bxe_A2026 | Bxe_B1216 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.999 |
Bxe_A2026 | Bxe_B1330 | PAS/PAC sensor hybrid histidine kinase. | Periplasmic sensor hybrid histidine kinase. | 0.997 |
Bxe_A2026 | Bxe_B1887 | PAS/PAC sensor hybrid histidine kinase. | Putative enoyl-CoA hydratase/isomerase. | 0.881 |
Bxe_A2026 | Bxe_C0515 | PAS/PAC sensor hybrid histidine kinase. | Enoyl-CoA hydratase. | 0.881 |
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