STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
boxA-2benzoyl-CoA oxygenase, component A; Citation: J. Bacteriol. 2002 Nov;184(22):6301- 15.Mol. Microbiol. 2004 Oct;54(1):223-38. Appl EnvironMicrobiol. 2004 Aug;70(8):4961-70. (414 aa)    
Predicted Functional Partners:
boxB-2
benzoyl-CoA oxygenase, component B; Citation: J. Bacteriol. 2002 Nov;184(22):6301- 15.Mol. Microbiol. 2004 Oct;54(1):223-38. Appl EnvironMicrobiol. 2004 Aug;70(8):4961-70.
 
  
 0.997
Bxe_A2212
Sulfite reductase (NADPH) alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
0.993
Bxe_C0528
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
   
 0.992
fdhA
Formate dehydrogenase alpha subunit.
  
 0.985
fdhC
Formate dehydrogenase gamma subunit.
   
 0.975
Bxe_A3210
NADH dehydrogenase subunit E.
  
 0.975
boxC-2
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; Citation: J. Bacteriol. 2002 Nov;184(22):6301- 15.Mol. Microbiol. 2004 Oct;54(1):223-38. Appl EnvironMicrobiol. 2004 Aug;70(8):4961-70. Mol. Microbiol. 2005Jun;56(6):1586-1600.
 
  
 0.974
Bxe_C0531
NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
   
 0.969
Bxe_C0530
Hydrogen dehydrogenase.
   
 0.967
boxB
benzoyl-CoA oxygenase, component B; Citation: J. Bacteriol. 2002 Nov;184(22):6301- 15.Mol. Microbiol. 2004 Oct;54(1):223-38. Appl EnvironMicrobiol. 2004 Aug;70(8):4961-70.
 
  
 0.957
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.