Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bxe_A0141 | Bxe_C1174 | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | Transposition protein TniB; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.668 |
Bxe_A2441 | Bxe_C0755 | Putative recombinase, transposition resolvase, TnpR. | Putative site-specific recombinase. | 0.626 |
Bxe_A2441 | Bxe_C1173 | Putative recombinase, transposition resolvase, TnpR. | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.516 |
Bxe_A2441 | Bxe_C1174 | Putative recombinase, transposition resolvase, TnpR. | Transposition protein TniB; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.501 |
Bxe_A2441 | Bxe_C1209 | Putative recombinase, transposition resolvase, TnpR. | Putative resolvase. | 0.751 |
Bxe_A2441 | Bxe_C1218 | Putative recombinase, transposition resolvase, TnpR. | Putative invertase. | 0.741 |
Bxe_C0755 | Bxe_A2441 | Putative site-specific recombinase. | Putative recombinase, transposition resolvase, TnpR. | 0.626 |
Bxe_C0755 | Bxe_C1173 | Putative site-specific recombinase. | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.509 |
Bxe_C0755 | Bxe_C1174 | Putative site-specific recombinase. | Transposition protein TniB; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.497 |
Bxe_C0755 | Bxe_C1179 | Putative site-specific recombinase. | Transposase. | 0.588 |
Bxe_C0755 | Bxe_C1202 | Putative site-specific recombinase. | Transposase Tn3. | 0.588 |
Bxe_C0755 | Bxe_C1209 | Putative site-specific recombinase. | Putative resolvase. | 0.774 |
Bxe_C1173 | Bxe_A2441 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Putative recombinase, transposition resolvase, TnpR. | 0.516 |
Bxe_C1173 | Bxe_C0755 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Putative site-specific recombinase. | 0.509 |
Bxe_C1173 | Bxe_C1174 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Transposition protein TniB; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.988 |
Bxe_C1173 | Bxe_C1175 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Transposition protein TniQ; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | 0.837 |
Bxe_C1173 | Bxe_C1179 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Transposase. | 0.748 |
Bxe_C1173 | Bxe_C1184 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Predicted transcriptional regulator. | 0.503 |
Bxe_C1173 | Bxe_C1202 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Transposase Tn3. | 0.748 |
Bxe_C1173 | Bxe_C1209 | Integrase TniA; Citation: Mol Microbiol. 1995 Sep;17(6):1189-200. | Putative resolvase. | 0.743 |
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