STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bphA4Biphenyl 2,3-dioxygenase ferredoxin reductase subunit (BphA4); Part of the electron transfer component of biphenyl dioxygenase, transfers electrons from ferredoxin (BphF) to NADH. (408 aa)    
Predicted Functional Partners:
bphA3
Biphenyl 2,3-dioxygenase ferredoxin subunit (BphA3); This protein seems to be a 2Fe-2S ferredoxin.
 
 0.995
Bxe_A2212
Sulfite reductase (NADPH) alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 0.970
Bxe_B1110
Anthranilate dioxygenase ferredoxin reductase(AndAb); Citation: J. Bacteriol. 183 (2), 700-708 (2001).
 
 0.963
andAb
Anthranilate dioxygenase ferredoxin subunit(AndAb); Citation: J. Bacteriol. 185 (19), 5871-5881(2003).
 
 0.962
Bxe_C0940
Putative Rieske (2Fe-2S) ferredoxin.
 0.957
Bxe_B0173
Rieske (2Fe-2S) region.
 
 0.956
Bxe_A2213
Assimilatory nitrite reductase (NAD(P)H) small subunit.
 0.942
napA
Periplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
   
 0.919
Bxe_B1329
Putative dioxygenase, ferredoxin reductase component.
 
0.901
bphB
Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (BphB); Biphenyl pathway; Citation: J. Bacteriol. 174 (9), 2903-2912 (1992); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.900
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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