STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_C1273Sugar binding or transport, RbsD/FucU; Belongs to the RbsD / FucU family. (162 aa)    
Predicted Functional Partners:
rbsK-3
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
     0.837
Bxe_C1275
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
 
     0.653
Bxe_C1274
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.652
Bxe_C1270
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-.
 
   
 0.637
Bxe_C1271
Monosaccharide ABC transporter membrane protein, CUT2 family; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
       0.581
Bxe_B1396
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-.
 
   
 0.561
xylB
Xylulokinase.
  
 
 0.504
Bxe_A0712
Putative sugar kinase protein.
  
 
 0.504
xylB-2
Xylulokinase.
  
 
 0.504
Bxe_B1038
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-.
 
   
 0.479
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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