STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_C1318Peptidase C56, PfpI. (227 aa)    
Predicted Functional Partners:
Bxe_C0528
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
  
 
 0.819
Bxe_A3479
Putative copper/zinc superoxide dismutase.
  
 
 0.803
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.767
ABE33927.1
Hypothetical protein.
   
 0.748
Bxe_C1317
Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.
       0.746
Bxe_A0992
Putative histone deacetylase-family protein.
    
  0.729
Bxe_B1514
Putative histone deacetylase-family protein.
    
  0.729
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.725
Bxe_C1320
Hypothetical protein.
 
    
0.715
Bxe_C1319
Putative phosphotriesterase; Belongs to the metallo-dependent hydrolases superfamily. Phosphotriesterase family.
       0.705
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.