STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HY04_06125Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
penA
Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.883
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
    0.815
rodA
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
 
     0.800
HY04_06085
Cell division protein FtsQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
HY04_05285
Ferric siderophore ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
HY04_00835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
HY04_01925
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
HY04_07900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.749
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
       0.749
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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