STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCCell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)    
Predicted Functional Partners:
HY04_13725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.725
HY04_08875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.710
HY04_04270
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.708
HY04_14250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.655
HY04_07180
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.595
HY04_08865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.560
yabJ
dfrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
envC
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.516
HY04_05450
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.511
mrcA
Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.487
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.