STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheRChemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
cheB
Chemotaxis protein CheB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
luxQ
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
phoR_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
phoR_4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
divK
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.938
cqsS
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.891
yiaD_2
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
ruvB
ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
    
   0.828
phoR_5
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.826
zraR_2
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.604
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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