STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ36_01745Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)    
Predicted Functional Partners:
HQ36_01740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.801
HQ36_01500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.766
HQ36_08770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.766
HQ36_01750
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.757
HQ36_05915
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
HQ36_04395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.574
HQ36_02265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
HQ36_04455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
dnaG
Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
    0.526
HQ36_02585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
Your Current Organism:
Porphyromonas gingivicanis
NCBI taxonomy Id: 266762
Other names: ATCC 55562, JCM 15907, NUM 301, P. gingivicanis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.