Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lysSPFAM: Lysyl-tRNA synthetase, class 1c; KEGG: bhe:BH00240 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (553 aa)    
Predicted Functional Partners:
Meso_3414
PFAM: protein of unknown function DUF1013; KEGG: bmb:BruAb1_1722 hypothetical protein.
  
    0.758
Meso_1982
PFAM: protein of unknown function DUF1321; KEGG: mlo:mlr1474 hypothetical protein.
  
     0.709
Meso_3367
KEGG: mlo:mll3968 hypothetical protein; Belongs to the UPF0335 family.
  
     0.646
Meso_3071
Cobaltochelatase CobT subunit; KEGG: mlo:mll3561 CobT protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.
  
     0.599
Meso_0016
KEGG: bmb:BruAb2_0443 hypothetical protein.
       0.574
Meso_3376
PFAM: helicase-like; KEGG: mlo:mlr3852 MgpS, ATP-dependent helicase.
  
     0.572
gltX1
glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.535
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.502
Meso_3069
TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bme:BMEI0049 CobS protein.
  
     0.498
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.487
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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