STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0032PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll5481 probable DNA ligase. (536 aa)    
Predicted Functional Partners:
Meso_0031
KEGG: mlo:mll5484 putative mRNA 3-end processing factor.
 0.984
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
    
 0.912
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.893
Meso_0028
PFAM: metallophosphoesterase; KEGG: mlo:mlr5611 hypothetical protein.
 
   
 0.889
Meso_0029
DEAD/H associated; PFAM: helicase-like DEAD/DEAH box helicase-like DEAD/H associated; KEGG: mlo:mlr5610 probable ATP dependent DNA helicase.
 
    0.876
Meso_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.873
Meso_0030
Methyltransferase type 12; PFAM: Tetratricopeptide TPR_2 Methyltransferase type 11 Methyltransferase type 12; SMART: Tetratricopeptide region; KEGG: mlo:mlr5485 hypothetical protein.
 
     0.650
Meso_1582
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: mlo:mll0423 DNA polymerase III, delta prime subunit.
   
 0.597
Meso_2700
PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll9685 probable DNA ligase.
  
     0.571
Meso_0541
PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: ecc:c5378 hypothetical protein.
   
 0.535
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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