Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0041PFAM: extracellular solute-binding protein, family 3; KEGG: cgb:cg1504 ABC-type amino acid transport system, secreted component; TC 3.A.1.3.-. (296 aa)    
Predicted Functional Partners:
Meso_0040
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa2197 putative ABC transporter, permease; TC 3.A.1.3.-.
 
 0.967
Meso_0039
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.
 
 0.937
Meso_0043
Hypothetical protein; KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase.
 
  
  0.910
Meso_0042
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA0822 putative carbon-nitrogen hydrolase.
 
     0.780
Meso_0044
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: sma:SAV7000 putative GntR-family transcriptional regulator.
 
     0.728
Meso_3148
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; TC 3.A.1.3.-.
 
 0.704
Meso_1563
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 0.692
Meso_3977
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_980GM putative ABC transporter permease; TC 3.A.1.3.-.
 
 0.691
Meso_3976
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 0.681
Meso_1115
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.
 
 0.679
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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