Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0045Hypothetical protein. (103 aa)    
Predicted Functional Partners:
Meso_0044
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: sma:SAV7000 putative GntR-family transcriptional regulator.
       0.618
Meso_0042
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA0822 putative carbon-nitrogen hydrolase.
       0.444
Meso_0043
Hypothetical protein; KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase.
       0.444
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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