Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_0049TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_3770 TRAP C4-dicarboxylate transport system permease DctM subunit. (591 aa)    
Predicted Functional Partners:
Meso_0788
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein.
 
 0.987
Meso_3615
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_L_113 hypothetical protein.
 
0.963
Meso_2517
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB3422 putative inner membrane transport protein.
 
 0.959
Meso_2490
KEGG: eba:ebB188 hypothetical protein.
  
 0.953
Meso_3714
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO3664 hypothetical protein.
  
 0.948
Meso_2812
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB0704 hypothetical protein.
 
  
  0.921
Meso_0345
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_3371 TRAP-T family transporter, small (4 TMs) inner membrane subunit.
 
  
  0.916
Meso_2903
KEGG: jan:Jann_2036 hypothetical protein.
    
  0.901
Meso_2936
KEGG: jan:Jann_2036 hypothetical protein.
    
  0.901
Meso_3715
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB2985 hypothetical protein.
 
 
 0.851
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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