Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0050PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0661 TRAP dicarboxylate transporter-DctP subunit. (333 aa)    
Predicted Functional Partners:
Meso_3615
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_L_113 hypothetical protein.
  
 
 0.826
Meso_0049
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_3770 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
 
 0.815
Meso_2491
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eba:ebA5367 conserved hypothetical protein, predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.
 
 
 0.803
Meso_2490
KEGG: eba:ebB188 hypothetical protein.
 
 
 0.776
Meso_3714
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO3664 hypothetical protein.
 
 
 0.767
Meso_2904
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit.
  
     0.758
Meso_2935
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_2035 TRAP-type C4-dicarboxylate transport system periplasmic component-like.
  
     0.758
Meso_3713
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2984 hypothetical protein.
 
 
 0.658
Meso_2937
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_2037 TRAP dicarboxylate transporter-DctM subunit.
 
 
 0.596
Meso_0788
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein.
 
 
 0.585
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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