Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0055TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: bbr:BB3255 putative glutathione-S-transferase. (214 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
 
 0.984
Meso_2887
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mlo:mlr8306 hypothetical protein.
 
 
 0.975
Meso_3563
TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: mlo:mlr1135 maleylacetoacetate isomerase.
  
  
 
0.906
Meso_2885
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01745 probable 4-hydroxyphenylpyruvate dioxygenase protein.
 
 
 0.869
Meso_0054
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bte:BTH_II1389 fumarylacetoacetate hydrolase family protein.
  
  
 0.812
Meso_0056
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.773
Meso_0053
TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel; KEGG: pae:PA2470 gentisate 1,2-dioxygenase.
 
   
 0.697
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.696
rpoD
RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.680
Meso_0052
3-hydroxybenzoate 6-hydroxylase; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bur:Bcep18194_B1886 monooxygenase, FAD-binding.
     
 0.629
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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