Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_0065PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein. (311 aa)    
Predicted Functional Partners:
Meso_0066
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00787 probable dipeptide transport system permease protein.
 
  0.996
Meso_0064
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mlr5419 ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
  0.994
Meso_0063
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
  0.992
Meso_0067
PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc00786 probable periplasmic dipeptide-binding protein.
 
  0.982
Meso_0074
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein.
 
  0.949
Meso_0076
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sil:SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: binding-protein-dependent transport systems inner membrane component ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase.
 
 
0.941
Meso_1856
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein.
 
  0.853
Meso_3132
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1241 oligopeptide ABC transporter permease.
 
  0.853
Meso_0402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3036 ABC transporter, membrane spanning protein [dipeptide].
 
  0.850
Meso_2382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB.
  
  0.849
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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