Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_0067PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc00786 probable periplasmic dipeptide-binding protein. (542 aa)    
Predicted Functional Partners:
Meso_0065
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein.
 
  0.982
Meso_0066
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00787 probable dipeptide transport system permease protein.
 
  0.981
Meso_0063
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
 
  0.964
Meso_0064
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mlr5419 ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.
 
  0.950
Meso_1592
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: mlo:mll0708 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
     
  0.721
Meso_1593
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0706 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
     
  0.721
Meso_1699
PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr0514 probable binding protein component of ABC transporter.
  
 
 0.720
Meso_1115
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.
   
 
  0.719
Meso_1114
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
   
 
  0.718
Meso_1506
PFAM: extracellular solute-binding protein, family 5; KEGG: psp:PSPPH_2786 ABC-transport protein, solute-binding component.
  
  
 
0.717
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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