Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0092KEGG: bmb:BruAb1_0339 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Meso_0167
AsmA; PFAM: AsmA; KEGG: mlo:mll6538 AsmA protein, assembly of outermembrane proteins.
  
     0.692
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.680
Meso_4047
KEGG: mlo:msr5525 hypothetical protein.
  
     0.680
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.670
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.657
Meso_0426
KEGG: mlo:mlr8251 hypothetical protein.
  
     0.655
Meso_2205
KEGG: mlo:mlr2761 hypothetical protein.
  
     0.608
Meso_0093
PFAM: protein of unknown function DUF952; KEGG: mlo:mll5682 hypothetical protein.
       0.602
Meso_1786
KEGG: mlo:mlr0006 hypothetical protein.
  
     0.576
Meso_0312
KEGG: atc:AGR_C_1076 hypothetical protein.
  
     0.552
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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