Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0110TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: plu:plu3771 type III secretion component protein SctR. (220 aa)    
Predicted Functional Partners:
Meso_0112
TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: dvu:DVUA0102 type III secretion inner membrane protein.
 
 
 0.996
Meso_0104
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF; KEGG: bja:blr1813 nodulation prrotein nolT.
 
 
 0.993
Meso_0111
PFAM: export protein FliQ, family 3; KEGG: dvu:DVUA0103 type III secretion protein, HrpO family.
 
 
 0.988
Meso_0119
PFAM: type III secretion FHIPEP; KEGG: yps:pYV0060 putative membrane-bound Yop protein.
 
 
 0.978
Meso_0113
PFAM: type III secretion exporter; KEGG: yps:pYV0074 putative type III secretion protein.
 
 
 0.970
Meso_0107
KEGG: dvu:DVUA0119 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; SMART: ATPase.
 
  
 0.967
Meso_0118
PFAM: NolW-like; KEGG: bte:BTH_II0777 type II/III secretion system protein.
 
 
 0.961
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 
 0.931
Meso_0109
PFAM: surface presentation of antigens (SPOA) protein; KEGG: cvi:CV2625 surface presentation of antigens; secretory proteins.
  
  
 0.930
Meso_0305
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.930
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.