Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_0126PFAM: FAD dependent oxidoreductase; KEGG: bme:BMEII0391 sarcosine oxidase beta subunit. (428 aa)    
Predicted Functional Partners:
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
  
 0.854
Meso_0127
Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: mlo:mlr4139 peptidyl-dipeptidase.
       0.773
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.709
Meso_0161
PFAM: glutamine synthetase, catalytic region; KEGG: bms:BRA0768 glutamine synthetase family protein.
 
  
 0.660
Meso_3637
PFAM: BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nar:Saro_2940 BFD-like (2Fe-2S)-binding protein.
 
 
 0.593
Meso_2816
Peptidase C26; PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: mlo:mll5165 hypothetical protein.
 
  
 0.551
Meso_3636
PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll7022 sarcosine oxidase, subunit beta.
  
   
 0.485
Meso_1162
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: bms:BR0789 agmatinase, putative; Belongs to the arginase family.
 
  
 0.461
Meso_0125
PFAM: regulatory protein, LysR; KEGG: tbd:Tbd_2651 transcriptional regulator.
       0.459
Meso_0128
PFAM: regulatory protein, TetR; KEGG: rru:Rru_A1794 transcriptional regulator, TetR family.
       0.450
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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