Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0128PFAM: regulatory protein, TetR; KEGG: rru:Rru_A1794 transcriptional regulator, TetR family. (235 aa)    
Predicted Functional Partners:
Meso_0129
PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03250 probable protein secretion protein, HlyD family.
 
  
 0.881
Meso_0131
PFAM: ABC-2 type transporter; KEGG: sme:SMb21205 putative ABC transporter permease protein.
 
     0.866
Meso_0132
PFAM: ABC-2 type transporter; KEGG: sme:SMb21204 putative ABC transporter permease protein.
 
     0.863
Meso_0130
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb21206 putative ABC transporter ATP-binding protein, consisting of 2 fused ATP-binding domains.
 
   
 0.861
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
   
 0.511
Meso_0126
PFAM: FAD dependent oxidoreductase; KEGG: bme:BMEII0391 sarcosine oxidase beta subunit.
       0.450
Meso_0127
Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: mlo:mlr4139 peptidyl-dipeptidase.
       0.450
Meso_0125
PFAM: regulatory protein, LysR; KEGG: tbd:Tbd_2651 transcriptional regulator.
 
 
   0.400
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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