Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0129PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03250 probable protein secretion protein, HlyD family. (344 aa)    
Predicted Functional Partners:
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
  
 0.960
Meso_0131
PFAM: ABC-2 type transporter; KEGG: sme:SMb21205 putative ABC transporter permease protein.
 
  
 0.956
Meso_0132
PFAM: ABC-2 type transporter; KEGG: sme:SMb21204 putative ABC transporter permease protein.
 
  
 0.956
Meso_0130
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb21206 putative ABC transporter ATP-binding protein, consisting of 2 fused ATP-binding domains.
 
  
 0.955
Meso_0128
PFAM: regulatory protein, TetR; KEGG: rru:Rru_A1794 transcriptional regulator, TetR family.
 
  
 0.881
Meso_2795
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bmb:BruAb1_0302 transporter, hypothetical; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.820
Meso_1920
PFAM: secretion protein HlyD; KEGG: mlo:mlr8231 efflux pump protein FarA.
 
  
 
0.817
Meso_2619
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mlr3647 RND efflux membrane fusion protein precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.786
Meso_3333
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mll3833 similar to periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.786
Meso_2287
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sil:SPO1526 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.730
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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