Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0137TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain Haemagluttinin; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel. (1519 aa)    
Predicted Functional Partners:
Meso_0338
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: sme:SMc01657 putative ferrichrome-iron receptor precursor protein.
    
 
 0.693
Meso_0118
PFAM: NolW-like; KEGG: bte:BTH_II0777 type II/III secretion system protein.
  
    0.623
Meso_0616
Peptidase, metallopeptidase; PFAM: Hemolysin-type calcium-binding region peptidase M10A and M12B, matrixin and adamalysin peptidase, metallopeptidases; SMART: Peptidase, metallopeptidases; KEGG: sme:SMa0034 possible protease.
  
 
 0.575
Meso_0791
Animal heme peroxidase; PFAM: Hemolysin-type calcium-binding region Animal haem peroxidase; KEGG: ppu:PP2561 secreted hemolysin-type calcium-binding bacteriocin, putative.
  
 
 0.575
Meso_0793
PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein.
  
 
 0.575
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
 
  
 0.418
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
     
 0.416
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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