Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_0146RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: atc:AGR_C_2739 ECF sigma factor. (167 aa)    
Predicted Functional Partners:
Meso_0145
Putative transmembrane anti-sigma factor; KEGG: atc:AGR_C_2736 hypothetical protein.
 
 
 0.960
Meso_0147
PFAM: Secreted repeat of unknown function; KEGG: atc:AGR_C_2741 hypothetical protein.
 
     0.818
Meso_0144
PFAM: cytochrome B561; KEGG: atc:AGR_C_2735 hypothetical protein.
       0.779
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.775
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.775
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.774
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.767
Meso_3108
KEGG: mlo:msl3698 hypothetical protein.
   
   0.745
Meso_3109
PFAM: response regulator receiver Sigma-70, region 4 type 2; KEGG: mlo:mlr3700 two-component response regulator.
 
 
 0.579
Meso_0148
YceI; PFAM: YceI; KEGG: sme:SMc01021 hypothetical protein; Belongs to the UPF0312 family.
       0.520
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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