STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0148YceI; PFAM: YceI; KEGG: sme:SMc01021 hypothetical protein; Belongs to the UPF0312 family. (188 aa)    
Predicted Functional Partners:
Meso_0144
PFAM: cytochrome B561; KEGG: atc:AGR_C_2735 hypothetical protein.
 
  
 0.826
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.588
Meso_0145
Putative transmembrane anti-sigma factor; KEGG: atc:AGR_C_2736 hypothetical protein.
       0.558
Meso_0147
PFAM: Secreted repeat of unknown function; KEGG: atc:AGR_C_2741 hypothetical protein.
       0.548
Meso_0146
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: atc:AGR_C_2739 ECF sigma factor.
       0.520
Meso_0149
KEGG: bja:blr2987 hypothetical protein.
       0.423
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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