Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0170PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc00784 putative iron binding protein. (349 aa)    
Predicted Functional Partners:
Meso_0169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein.
 
 
 0.990
Meso_0827
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4775 putative iron(III)-transport system permease.
 
 
 0.956
Meso_1807
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc02068 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.939
Meso_2660
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1307 similar to ABC-type Fe3+ transport system permease component.
 
 
 0.931
Meso_2658
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A3199 extracellular solute-binding protein, family 1.
     
 0.911
Meso_0828
Hypothetical protein; KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor.
     
  0.900
Meso_0643
Imelysin. Metallo peptidase. MEROPS family M75; KEGG: bbr:BB1721 putative iron-regulated protein.
  
    0.824
Meso_0642
PFAM: protein of unknown function DUF1111; KEGG: bbr:BB1722 hypothetical protein.
 
    0.553
Meso_0171
KEGG: mlo:mll6540 two component histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
       0.543
Meso_3188
PFAM: OmpA/MotB; KEGG: mlo:mlr3926 similar to flagellar motor protein MotB.
    
   0.531
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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