Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0179UspA; PFAM: UspA; KEGG: rsp:RSP_3802 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Meso_0178
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPO2186 TRAP transporter, 4TM/12TM fusion protein.
 
    0.908
Meso_0177
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: sil:SPO2187 TRAP transporter solute receptor, TAXI family.
 
    0.770
Meso_0176
PFAM: aminotransferase class-III; KEGG: sme:SMb20277 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.605
Meso_0174
PFAM: protein of unknown function DUF849; KEGG: sme:SMb20275 hypothetical protein.
 
     0.505
Meso_0180
PFAM: HWE histidine kinase PAS fold-4; KEGG: rsp:RSP_2030 putative sensor histidine kinase.
       0.476
Meso_0175
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); KEGG: sme:SMb20276 putative transcriptional regulator protein.
 
     0.414
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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