Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0233KEGG: mlo:mll0453 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Meso_0234
KEGG: mlo:mll0452 hypothetical protein.
       0.805
Meso_0235
Hypothetical protein; KEGG: rso:RSc3232 putative bacteriophage-related protein.
       0.550
Meso_0232
KEGG: bbr:BB2205 hypothetical protein.
       0.547
Meso_0237
KEGG: ret:RHE_CH01103 hypothetical protein.
       0.497
Meso_0236
KEGG: ret:RHE_CH01102 hypothetical protein.
       0.490
Meso_0239
KEGG: bme:BMEI1691 hypothetical membrane spanning protein.
       0.455
Meso_0238
KEGG: mlo:mlr8538 hypothetical protein.
       0.413
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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