Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0240Microcystin-dependent protein-like protein; KEGG: cps:CPS_4424 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Meso_0241
KEGG: ppu:PP1573 major tail protein, putative.
  
    0.598
Meso_3432
PFAM: Helix-turn-helix, type 11; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein).
  
     0.484
Meso_0238
KEGG: mlo:mlr8538 hypothetical protein.
       0.454
Meso_0237
KEGG: ret:RHE_CH01103 hypothetical protein.
       0.450
Meso_1886
TIGRFAM: phage head-tail adaptor, putative; KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative.
  
   0.450
Meso_1898
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2360 putative head portal protein, HK97 family.
   
 
 0.445
Meso_0236
KEGG: ret:RHE_CH01102 hypothetical protein.
       0.442
Meso_0239
KEGG: bme:BMEI1691 hypothetical membrane spanning protein.
       0.442
Meso_1895
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family.
   
   0.438
Meso_1887
KEGG: nwi:Nwi_1620 hypothetical protein.
   
   0.434
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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