Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0257SpoVR; PFAM: SpoVR; KEGG: sme:SMc01265 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Meso_0256
PFAM: protein of unknown function DUF444; KEGG: sme:SMc01266 hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.992
Meso_0255
PFAM: PrkA serine kinase PrkA AAA; KEGG: sme:SMc01267 serine protein kinase.
 
  
 0.991
Meso_1784
PFAM: protein of unknown function DUF1508; KEGG: ret:RHE_CH03509 hypothetical protein.
   
  
 0.679
Meso_3241
PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sth:STH1827 leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.602
Meso_1498
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
   
    0.504
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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