Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0260TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll4054 2-deoxy-D-gluconate 3-dehydrogenase. (252 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
Meso_3946
6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  0.817
Meso_2515
TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: sme:SMb20371 putative sugar-phosphate isomerase protein.
    
 0.806
Meso_0005
PFAM: ribulose-phosphate 3-epimerase; KEGG: mlo:mlr4760 pentose(ribulose)-5-phosphate-3-epimerase.
   
 
 0.804
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 0.760
Meso_0259
PFAM: alpha-2-macroglobulin-like N/apple PAN alpha-2-macroglobulin-like 2; KEGG: mlo:mlr1663 hypothetical protein.
   
  0.566
Meso_0262
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20014 putative transcriptional regulator protein.
   
   0.475
Meso_3682
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein.
  
 
  0.468
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.465
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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