Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_0262Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20014 putative transcriptional regulator protein. (344 aa)    
Predicted Functional Partners:
Meso_0264
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: sme:SMb20016 putative sugar ABC transporter permease protein ABC transporter; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.886
Meso_0263
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: sme:SMb20015 putative sugar ABC transporter permease protein ABC transporter; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.884
Meso_2744
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain.
    
 
 0.849
Meso_0265
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20017 putative sugar ABC transporter ATP-binding protein ABC transporter; TC 3.A.1.2.-.
 
  
 0.843
Meso_0261
PFAM: oxidoreductase-like; KEGG: sme:SMb20013 hypothetical protein.
 
   
 0.801
Meso_0266
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: sme:SMb20018 putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter; TC 3.A.1.2.-.
 
  
 0.781
Meso_3575
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mlo:msl5090 phosphocarrier protein HPr.
 
 
 
 0.758
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.589
Meso_0260
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll4054 2-deoxy-D-gluconate 3-dehydrogenase.
   
   0.475
rbsK
PfkB; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.462
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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