Meso_0304 protein (Chelativorans sp. BNC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Meso_0304

PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2904 flagellar motor switch protein FliM. (311 aa)

Predicted Functional Partners:

Meso_0306

0.999

Meso_0305

0.998

fliE

0.994

Meso_0298

0.994

Meso_0290

0.987

Meso_0286

0.986

Meso_0302

0.986

Meso_0294

0.984

Meso_0295

0.982

Meso_0297

0.982

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Meso_0286	Meso_0290	Meso_0286	Meso_0290	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.970
Meso_0286	Meso_0294	Meso_0286	Meso_0294	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.	0.968
Meso_0286	Meso_0295	Meso_0286	Meso_0295	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: mlo:mlr2915 flagellar basal body distal rod protein, FlgG; Belongs to the flagella basal body rod proteins family.	0.995
Meso_0286	Meso_0297	Meso_0286	Meso_0297	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078-like; KEGG: mlo:mlr2912 flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	0.996
Meso_0286	Meso_0298	Meso_0286	Meso_0298	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	KEGG: mlo:mlr2911 flagellar basal-body rod protein flgB.	0.995
Meso_0286	Meso_0302	Meso_0286	Meso_0302	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	PFAM: protein of unknown function DUF1217; KEGG: sme:SMc03023 hypothetical protein.	0.972
Meso_0286	Meso_0304	Meso_0286	Meso_0304	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2904 flagellar motor switch protein FliM.	0.986
Meso_0286	Meso_0305	Meso_0286	Meso_0305	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.980
Meso_0286	Meso_0306	Meso_0286	Meso_0306	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	PFAM: flagellar motor switch protein FliG; KEGG: mlo:mll2901 flagellar motor switch protein FliG.	0.996
Meso_0286	fliE	Meso_0286	Meso_0296	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	PFAM: flagellar hook-basal body complex protein FliE; KEGG: mlo:mlr2913 flagellar hook-basal body protein fleE.	0.992
Meso_0290	Meso_0286	Meso_0290	Meso_0286	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.970
Meso_0290	Meso_0294	Meso_0290	Meso_0294	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.	0.986
Meso_0290	Meso_0295	Meso_0290	Meso_0295	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: mlo:mlr2915 flagellar basal body distal rod protein, FlgG; Belongs to the flagella basal body rod proteins family.	0.923
Meso_0290	Meso_0297	Meso_0290	Meso_0297	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078-like; KEGG: mlo:mlr2912 flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	0.957
Meso_0290	Meso_0298	Meso_0290	Meso_0298	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	KEGG: mlo:mlr2911 flagellar basal-body rod protein flgB.	0.989
Meso_0290	Meso_0302	Meso_0290	Meso_0302	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	PFAM: protein of unknown function DUF1217; KEGG: sme:SMc03023 hypothetical protein.	0.967
Meso_0290	Meso_0304	Meso_0290	Meso_0304	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2904 flagellar motor switch protein FliM.	0.987
Meso_0290	Meso_0305	Meso_0290	Meso_0305	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.901
Meso_0290	Meso_0306	Meso_0290	Meso_0306	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	PFAM: flagellar motor switch protein FliG; KEGG: mlo:mll2901 flagellar motor switch protein FliG.	0.953
Meso_0290	fliE	Meso_0290	Meso_0296	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	PFAM: flagellar hook-basal body complex protein FliE; KEGG: mlo:mlr2913 flagellar hook-basal body protein fleE.	0.986