Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0326SMART: regulatory protein, ArsR; KEGG: rpb:RPB_1970 transcriptional regulator, ArsR family, ArsR1. (123 aa)    
Predicted Functional Partners:
Meso_0325
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nwi:Nwi_3124 low molecular weight phosphotyrosine protein phosphatase.
  
 0.988
Meso_0324
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: nwi:Nwi_3125 arsenate reductase.
 
   
 0.901
Meso_0323
PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3.
 
  
 0.894
Meso_0327
PFAM: luciferase-like; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein.
       0.544
Meso_0322
PFAM: glutathione S-transferase-like; KEGG: ret:RHE_PB00095 probable glutathione S-transferase protein; Belongs to the GST superfamily.
     
 0.482
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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