Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0332PFAM: Asp/Glu racemase; KEGG: bur:Bcep18194_A5279 Asp/Glu racemase. (238 aa)    
Predicted Functional Partners:
Meso_2831
PFAM: polysaccharide deacetylase; KEGG: mlo:mll5132 hypothetical protein.
 
  
  0.947
Meso_2544
PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein.
    
 0.909
Meso_2641
PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein.
    
 0.909
Meso_0333
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bsu:BG12492 Allantoin permease.
 
     0.811
Meso_0335
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bps:BPSL2120 putative transport-related membrane protein.
 
     0.711
Meso_0334
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: atc:AGR_L_357 hypothetical protein.
 
     0.587
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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