Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0333PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bsu:BG12492 Allantoin permease. (451 aa)    
Predicted Functional Partners:
Meso_0332
PFAM: Asp/Glu racemase; KEGG: bur:Bcep18194_A5279 Asp/Glu racemase.
 
     0.811
Meso_2664
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase Amidohydrolase 3; KEGG: bms:BR0278 D-hydantoinase.
 
  
 0.562
Meso_2830
PFAM: protein of unknown function DUF861, cupin_3 Cupin 2, conserved barrel; KEGG: mlo:mll5131 hypothetical protein.
 
     0.542
Meso_0335
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bps:BPSL2120 putative transport-related membrane protein.
 
    
0.500
Meso_0334
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: atc:AGR_L_357 hypothetical protein.
       0.492
Meso_2546
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein.
 
  
 0.419
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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