Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0367PFAM: protein of unknown function DUF224, cysteine-rich region; KEGG: eba:ebA3918 predicted Fe-S oxidoreductase. (259 aa)    
Predicted Functional Partners:
Meso_0368
TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: rru:Rru_A3605 iron-sulfur cluster binding protein.
 
 0.998
Meso_0369
PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A3603 protein of unknown function DUF162.
 
 
 0.981
Meso_3243
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: mlo:mll4260 succinate dehydrogenase iron-sulfur protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
   0.818
Meso_0366
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll6911 transcriptional regulator.
     
 0.784
Meso_0370
PFAM: metallophosphoesterase; KEGG: mlo:mll6908 serine/threonine protein phosphatase.
       0.773
Meso_1861
PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1085 glycerol-3-phosphate dehydrogenase.
 
 
 0.763
Meso_1591
PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll0710 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.728
Meso_0364
PFAM: FAD linked oxidase-like; KEGG: mlo:mlr6916 glycolate oxidase subunit GlcD.
  
 0.654
Meso_0363
PFAM: FAD linked oxidase-like; KEGG: mlo:mlr6919 glycolate oxidase subunits GlcE.
 
  
 0.586
Meso_0365
Uncharacterized membrane-anchored protein-like protein; KEGG: mlo:mlr6914 hypothetical protein.
       0.522
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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