Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0395D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein. (421 aa)    
Predicted Functional Partners:
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
  
 0.855
Meso_0396
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.815
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.709
Meso_1587
PFAM: proline racemase; KEGG: ret:RHE_CH00452 probable proline racemase protein; Belongs to the proline racemase family.
 
   
 0.649
Meso_2568
PFAM: dihydrodipicolinate synthetase; KEGG: rru:Rru_A2066 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
   
 0.600
Meso_3637
PFAM: BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nar:Saro_2940 BFD-like (2Fe-2S)-binding protein.
 
 0.560
Meso_0397
MlrC-like protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.552
Meso_0844
PFAM: aldehyde dehydrogenase; KEGG: sme:SMb20262 putative semialdehyde dehydrogenase protein.
  
    0.525
Meso_0398
PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: bja:blr3621 probable hydantoin utilization protein.
  
    0.504
Meso_0399
KEGG: gme:Gmet_0847 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.481
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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