STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0396Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (385 aa)    
Predicted Functional Partners:
Meso_1428
TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mlo:mll9089 alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.943
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.937
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.936
Meso_1614
PFAM: aminotransferase, class IV; KEGG: mlo:mlr0401 D-alanine aminotransferase.
    
 0.916
Meso_2359
PFAM: aminotransferase, class IV; KEGG: bms:BRA0934 D-alanine aminotransferase, putative.
    
 0.912
Meso_0986
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 
0.911
Meso_0395
D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein.
  
  
 0.835
Meso_3308
Serine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: sil:SPOA0144 serine--glyoxylate transaminase, putative.
    
 0.814
Meso_2974
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mlr1729 ornithine cyclodeaminase.
     
 0.809
Meso_0079
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3399 carbon-nitrogen hydrolase family protein.
  
 
  0.805
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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