Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0401PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein. (283 aa)    
Predicted Functional Partners:
Meso_0402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3036 ABC transporter, membrane spanning protein [dipeptide].
 
  0.967
Meso_0400
KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
  0.942
Meso_0399
KEGG: gme:Gmet_0847 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
  0.916
Meso_0403
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: atc:AGR_L_3525 putative hemin-binding lipoprotein.
 
  0.902
Meso_1856
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein.
 
  0.863
Meso_0562
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1650 binding-protein-dependent transport systems inner membrane component.
 
  0.862
Meso_1951
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1437 probable ABC transporter permease.
 
  0.862
Meso_2382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB.
  
  0.862
Meso_2407
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1423 oligopeptide ABC transporter permease protein.
 
  0.862
Meso_2649
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0756 putative transport system permease protein.
 
  0.862
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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