Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0413PFAM: NIPSNAP domain containing protein; KEGG: bja:bll3657 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Meso_0410
PFAM: Xylose isomerase-like TIM barrel; KEGG: ppu:PP2603 hypothetical protein.
 
     0.773
Meso_0412
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.628
Meso_0414
PFAM: protein of unknown function DUF1468; KEGG: reu:Reut_B3643 protein of unknown function DUF1468.
       0.605
Meso_0415
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB2469 probable membrane protein.
       0.605
Meso_0783
PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll6916 hypothetical protein.
 
     0.587
Meso_0411
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bja:bll6359 putative oxidoreductase protein.
       0.576
Meso_0416
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0983 hypothetical protein.
       0.494
Meso_2292
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: rpb:RPB_3090 fumarate reductase/succinate dehydrogenase flavoprotein.
 
     0.477
Meso_0417
Hypothetical protein.
       0.427
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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