STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0435PFAM: inositol monophosphatase; KEGG: bme:BMEII1032 myo-inositol-1(or 4)-monophosphatase. (264 aa)    
Predicted Functional Partners:
Meso_3185
PFAM: inositol monophosphatase; KEGG: mlo:mlr3921 putative myo-inositol-1(or 4)-monophosphatase.
  
  
 
0.927
Meso_2694
PFAM: GCN5-related N-acetyltransferase Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ret:RHE_CH02739 probable myo-inositol-1-phosphate synthase protein.
  
 
 0.914
Meso_0434
Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mlo:mlr8264 pmbA protein, maturation of antibiotic MccB17.
       0.801
Meso_0436
KEGG: sme:SMc00895 hypothetical protein.
     0.758
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   0.647
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.646
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
   0.628
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
 
 0.597
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.591
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.591
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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